The human body's microbial ecosystem

In this transcript of a talk given to the attendees of the Joint Summits on Translational Science, Carl Zimmer highlights an important aspect of understanding the human body and how to treat its many maladies: the ecosystem of microbes.

The microbes in your body at this moment outnumber your cells by ten to one. And they come in a huge diversity of species -- somewhere in the thousands, although no one has a precise count yet. By some estimates there are twenty million microbial genes in your body: about a thousand times more than the 20,000 protein-coding genes in the human genome. So the Human Genome Project was, at best, a nice start. If we really want to understand all the genes in the human body, we have a long way to go.

Now you could say "Who cares? They're just wee animalcules." Those wee animacules are worth caring about for many reasons. One of the most practical of those reasons is that they have a huge impact on our "own" health. Our collection of microbes-the microbiome-is like an extra organ of the human body. And while an organ like the heart has only one function, the microbiome has many.

When food comes into the gut, for example, microbes break some of them down using enzymes we lack. Sometimes the microbes and our own cells have an intimate volley, in which bacteria break down a molecule part way, our cells break it down some more, the bacteria break it down even more, and then finally we get something to eat.

Another thing that the microbiome does is manage the immune system. Certain species of resident bacteria, like Bacteroides fragilis, produce proteins that tamp down inflammation. When scientists rear mice that don't have any germs at all, they have a very difficult time developing a normal immune system. The microbiome has to tutor the immune system in how to do its job properly. It also acts like an immune system of its own, fighting off invading microbes, and helping to heal wounds.

While the microbiome may be an important organ, it's a peculiar one. It's not one solid hunk of flesh. It's an ecosystem, made up of thousands of interacting species.

New Monty Python movie (sort of)

Monty Python member Terry Jones is set to direct a sci-fi comedy that will feature other Python members "voicing key roles". Gilliam, Cleese, and Palin have all signed on and they're working on getting Eric Idle.

Members of Monty Python's Flying Circus are reteaming for "Absolutely Anything," a sci-fi farce combining CGI and live action, with Terry Jones to direct and Mike Medavoy to produce.

Plans are for filming to begin in the U.K. this spring, with the Pythons voicing key roles as a a group of aliens who endow an earthling with the power to do "absolutely anything" to see what a mess he'll make of things -- which is precisely what happens. There's also a talking dog named Dennis who seems to understand more about the mayhem that ensues than anyone else does. Robin Williams will voice the character.

"It's not a Monty Python picture, but it certainly has that sensibility," Jones told Variety.

(via ★vuokko)

Notable typefaces of 2011

Typographica shares their favorite typefaces of 2011.

The idea is simple: I invite a group of writers, educators, type makers and type users to look back at 2011 and pick the release that excited them most.

(via ★essl)

Today's insanity: homemade bungee jumping

Maybe I'm just way over-cautious but this guy does almost kill himself while bungee jumping off a bridge using a jury-rigged climbing rope and harness, right? This is just totally batshit crazy:

Skip ahead to about 1:30...everything before that is just filler. (via ★bryce)

By Jason Kottke    Jan 26, 2012       video

The Philly unburglary

Aaron Cohen calls this "the best story you'll read about a burglary you'll read this week" and I think he's right.

When John Davidson's apartment gets robbed, he learns that the easiest way to get his stuff back is to have one drug dealer lie to another drug dealer while he lies to the police.

Truthful movie posters

Posters for Oscar nominated movies that maybe tell the truth of each movie a bit more than the conventional posters. For instance, Iron Lady becomes Total Bitch, Tree of Life becomes Wuh?, and The Girl with the Dragon Tattoo becomes All the Rape, No Subtitles.

All the Rape, No Subtitles

(via ★vuokko)

By Jason Kottke    Jan 26, 2012       design   movies   remix

President John Tyler's grandsons are still alive!!

That's right, two exclamation points because this blows my mind. John Tyler was the 10th President of the United States. He was born in 1790 and took office in 1841. His son, Lyon Gardiner Tyler, was born in 1853, when Tyler was 63 years old1. Lyon had six children with two different wives2, two of whom were Lyon Gardiner Tyler, Jr. (born 1924 when Lyon Sr. was 71) and Harrison Ruffin Tyler (born 1928 when Lyon Sr. was 75). They are reportedly both still living in their 80s.

Someone needs to come up with a term for this sort of thing (history bridges? no.). There's also this 1956 game show appearance of a Lincoln assassination eyewitness and Supreme Court Justice Oliver Wendell Holmes (1841-1935) shaking hands during his lifetime with both John Quincy Adams (b 1767) and John F Kennedy (d 1963), one man spanning 200 years of American history. (via ★mattbucher)

[1] Tyler actually had two children after Lyon...Robert was born when he was 65 and Pearl followed at 70.

[2] Lyon's second wife was 36 years his junior and actually younger than each of his three previous children.

Mercenary hacker to the stars

Adrian Chen has an interview with a renegade IT guy named Martin who does social media, hacking, and other tech stuff for "High Net-worth Individuals" and criminals. One of things he does is set up drug rings with prepaid cell phones and a rotating collection of SIM cards a la the Barksdale/Bell drug crew in The Wire.

With Martin's system, each crewmember gets a cell phone that operates using a prepaid SIM card; they also get a two-week plastic pill organizer filled with 14 SIM cards where the pills should be. Each SIM card, loaded with $50 worth of airtime, is attached to a different phone number and stores all contacts, text messages and call histories associated with that number, like a removable hard drive. This makes a new SIM card effectively a new phone. Every morning, each crewmember swaps out his phone's card for the card in next day's compartment in the pill organizers. After all 14 cards are used, they start over at the first one.

Of course, it would be hugely annoying for a crewmember to have to remember the others' constantly changing numbers. But he doesn't have to, thanks to the pill organizers. Martin preprograms each day's SIM card with the phone numbers the other members have that day. As long they all swap out their cards every day, the contacts in the phones stay in sync. (They never call anyone but each other on the phones.) Crewmembers will remind each other to "take their medicine," Martin said.

That's clever. The "take their medicine" detail reads like it's straight out of the movies.

Debunking the Manhattan skyscraper bedrock myth

Economist Jason Barr and his colleagues measured the bedrock depth in Manhattan and correlated it with building height. In doing so, they busted the long-held belief that there were no skyscrapers between Midtown and the Financial District because of insufficient bedrock.

What the economists found was that some of the tallest buildings of their day were built around City Hall, where the bedrock reaches its deepest point in the city, about 45 meters down, between there and Canal Street, at which point the bedrock begins to rise again toward the middle of the island. Indeed, Joseph Pullitzer built his record-setting New York World Building, a 349-foot colossus, at 99 Park Row, near the nadir, as did Frank Woolworth a decade later.

(via @bobulate)

The secret language of stamps

From the 1890s until the 1960s, the location and orientation of stamps on postcards were used for the transmission of secret messages.

For all those who are in the situation of Hero and Leander, and similarly to them can only exchange secret signs about the feelings of their hearts, here we publish the secrets of the language of stamps. If the stamp stands upright in the upper right corner of the card or envelope, it means: I wish your friendship. Top right, across: Do you love me? Top right, upside down: Don't write me any more. Top right, thwart: Write me immediately. Top right, upright [once more again???]: Your love makes me happy. Top left, across: My heart belongs to someone else. Top left, upright: I love you. Bottom left, across: Leave me alone in my grief. In line with the name: Accept my love. Same place, across: I wish to see you. Same place, upside down: I love someone else.

Stamp language

Destroyed in seconds

Clip after clip of formerly intact objects (boats, planes, buildings) being destroyed in a matter of seconds.

(via @unlikelywords)

By Jason Kottke    Jan 25, 2012       video

David Ogilvy offers copywriting advice

Letters of Note ran a 1955 letter from advertising legend David Ogilvy that details his process for writing advertising copy.

I have never written an advertisement in the office. Too many interruptions. I do all my writing at home.

The web was invented in France, not Switzerland

David Galbraith updated his post on where the web was invented (which includes an interview with Tim Berners-Lee) to include the juicy tidbit that the building in which TBL invented the web is in France, not Switzerland.

I'll bet if you asked every French politician where the web was invented not a single one would know this. The Franco-Swiss border runs through the CERN campus and building 31 is literally just a few feet into France. However, there is no explicit border within CERN and the main entrance is in Switzerland, so the situation of which country it was invented in is actually quite a tricky one. The current commemorative plaque, which is outside a row of offices where people other than Tim Berners-Lee worked on the web, is in Switzerland. To add to the confusion, in case Tim thought of the web at home, his home was in France but he temporarily moved to rented accommodation in Switzerland, just around the time the web was developed. So although, strictly speaking, France is the birthplace of the web it would be fair to say that it happened in building 31 at CERN but not in any particular country! How delightfully appropriate for an invention which breaks down physical borders.

All she wants is a goddamn ride on my motorcycle

Before he died last year at the age of 44, Mike DeStefano shared the story of his wife's final days many years earlier. She's in hospice care, DeStefano shows up with his new Harley and takes her for a ride, morphine drip and all.

She's holding the pole [of the IV drip]! Marc, it was a pole with four wheels on the bottom, and we're riding around this hospice, and you could hear the goddamn wheels jangling and banging; it was insane.

And then I pass the front door, and all these nurses are standing out front, and they're all crying. They're watching us, and they're crying. And I didn't know why they were crying. I was like, Why are they crying? I didn't get what they were seeing. I didn't know. Because I was just in it; I was living it. I knew my wife who had suffered, she was a prostitute, she was a freakin' heroin addict, she was beaten by pimps -- this was her past -- and then she ends up with AIDS, and she's dying, and all she wants is a goddamn ride on my motorcycle.

So the next thing you know we're on I-95, because women, it's never enough for them. We're on I-95, and she unhooks the pole, and she's holding the morphine bag over her head with her gown that's flying up in the air so you could see her entire naked, bony body with the morphine bag whipping in the wind, and we're passing by these guys in their Lamborghinis, and I'm looking at them like, What the hell kind of life are you living? Look at me, I'm on top of the world here.

I love this story. The podcast from which it was taken is available here.

How a late night talk show works

Gavin Purcell produces Late Night with Jimmy Fallon and the other night on Twitter, he shared some info about how the show comes together.

Premakes: new movies with old actors

If recent movies like The Hangover, Drive, Inception, and Rushmore had been made in an earlier era, who would have starred in and directed these premakes? How about Dean Martin, Jack Lemmon, and Jerry Lewis in The Hangover?

Now Then Movies 01

Or Inception directed by Fritz Lang?

Now Then Movies 02

(thx, al)

By Jason Kottke    Jan 23, 2012       design   movies   remix

The invisible mother

Camera shutters used to be verrrry slow so to help young kids stay still during the long exposure, the photographer would have the mother be in the frame but typically covered by a blanket or cloth. Like so:

Invisible mothers

(via cup of jo)

Photographers pose with their famous photographs

For his new book, Tim Mantoani took hundreds of portraits of photographers posing with prints of their most well-known work. Here's Neil Leifer holding his photo of Ali standing over Liston.

Tim Mantoani

(via sly oyster)

Neat multiplication visualization

According to this YouTube video, Japanese do multiplication by drawing lines like this:

(via ★vuokko)

Mission Impossible - IKEA Protocol

Type designer Matthew Butterick sent a letter to director Brad Bird about the use of Verdana in captions and subtitles in the latest Mission Impossible movie.

Second, it's not stylistically suitable. Verdana is a built-in font on nearly every Windows and Mac computer. It's used on zillions of web pages. It's ubiquitous. Therefore, the person who uses Verdana suggests to readers "I couldn't be bothered to pick anything better." It's also well-known as the corporate font of IKEA -- probably not the association you're going for.

(via ★aaronsw)

Hero fixes grandparents' wifi

From McSweeney's, In Which I Fix My Girlfriend's Grandparents' WiFi and Am Hailed as a Conquering Hero.

But then one gray morning did Internet Explorer 6 no longer load The Google. Refresh was clicked, again and again, but still did Internet Explorer 6 not load The Google. Perhaps The Google was broken, the people thought, but then The Yahoo too did not load. Nor did Hotmail. Nor USAToday.com. The land was thrown into panic. Internet Explorer 6 was minimized then maximized. The Compaq Presario was unplugged then plugged back in. The old mouse was brought out and plugged in beside the new mouse. Still, The Google did not load.

(via @coudal)

1912 American Type Founders specimen book

The Internet Archive is hosting a copy of the American Specimen Book of Type Styles put out by the American Type Founders Company in 1912. It's a 1300-page book listing hundreds of typefaces and their possible use cases.

ATF Specimen

There's also a 1910 copy of what is basically the German version of the ATF book. Look at these swirls! (via @h_fj)

By Jason Kottke    Jan 20, 2012       books   design   typography

Bill Clinton interviewed

From the February 2012 issue of Esquire, an interview with former President Bill Clinton about the current political and governmental landscape in America.

One of the real dilemmas we have in our country and around the world is that what works in politics is organization and conflict. That is, drawing the sharp distinctions. But in real life, what works is networks and cooperation. And we need victories in real life, so we've got to get back to networks and cooperation, not just conflict. But politics has always been about conflict, and in the coverage of politics, information dissemination tends to be organized around conflict as well. It is extremely personal now, and you see in these primaries that the more people agree with each other on the issues, the more desperate they are to make the clear distinctions necessary to win, so the deeper the knife goes in.

Adele's Rolling in the Deep, covered and covered and covered

Adele's Rolling in the Deep has been covered thousands of times on YouTube...here's 70 of those performances cut together into one seamless song.

(via ★davidfg)

By Jason Kottke    Jan 19, 2012       Adele   music   remix   video

Shit New Yorkers say

A collection of things that New Yorkers say. Like "where's the train?", "you have to go to Brooklyn, it's the law", and "tourists!"

By Jason Kottke    Jan 19, 2012       NYC   video

Teenager has never seen a record before

Watch as John Scalzi's 13-year-old daughter sees an LP record for the first time.

This is... This is... What? What?! This is huge! This is like ten CDs in one. How many songs does it have on it?

I believe the record in question is from Jonathan Coulton. (via ★mathowie)

On the occasion of your going into space

Scott Carpenter was one of the original seven Mercury astronauts and the second American to orbit the Earth. Just before he went into space, his father wrote this wonderful letter.

And I venture to predict that after all the huzzas have been uttered and the public acclaim is but a memory, you will derive the greatest satisfaction from the serene knowledge that you have discovered new truths. You can say to yourself: this I saw, this I experienced, this I know to be the truth. This experience is a precious thing; it is known to all researchers, in whatever field of endeavour, who have ventured into the unknown and have discovered new truths.

Photos of 1980s New York City

From photographer Steven Siegel, a reminder of what a magical shithole NYC was in the 1980s. Oh hey, here's a hole in the Manhattan Bridge walkway:

Steven Siegel

See also kids digging up graves in Greenwood Cemetary, the abandoned West Side Highway, and what looks like a bombed-out Bushwick. (via gothamist)

George Lucas is retiring from movie making

Well, from making blockbuster movies anyway. And that's only one of the interesting tidbits in this long NY Times profile of Lucas

Lucas has decided to devote the rest of his life to what cineastes in the 1970s used to call personal films. They'll be small in scope, esoteric in subject and screened mostly in art houses. They'll be like the experimental movies Lucas made in the 1960s, around the time he was at U.S.C. film school, when he recorded clouds moving over the desert and made a movie based on an E. E. Cummings poem. During that period, Lucas assumed he would spend his career on the fringes. Then "Star Wars" happened -- and though Lucas often mused about it, he never committed himself to the uncommercial world until now.

Sitting in a sun-drenched office, his voice boyish, Lucas talked about himself as if he were a character in one of his movies. He's at the end of an epic saga; he's embracing a new destiny ("Make the art films, George"); he's battling former acolytes who have become his sworn enemies; and George Lucas is -- no kidding -- in love. Before he takes his digital camera with him into obscurity, though, Lucas has one last mission. He wants to prove that with "Red Tails," he can still make the kind of movie everyone in the world will want to see.

The whisky and water trick

I don't know if the nudie playing cards are absolutely essential, but this trick is pretty neat.

(via @itscolossal)

By Jason Kottke    Jan 18, 2012       food   physics   science   video

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